Highlight

Manufacturing at the molecular level engines to power nanocars represents a challenge in the development of nanomachines. A molecular engine formed of β-cyclodextrin (β-CD), aryl, and amide moiety has been studied by means of molecular dynamics simulations combined with free-energy calculations. The compression and decompression strokes involving the binding processes of the (Z)- and (E)-isomers of this engine with 1-adamantanol (AD) have been elucidated by determining the underlying potentials of mean force (PMFs). The difference in the binding-free energies, considered as the work generated by and stored within this engine, is calculated to be +1.5 kcal/mol, in remarkable agreement with the experimentally measured quantity. Partitioning the PMFs into physically meaningful free-energy components suggests that the two binding processes are primarily controlled by the favorable inclusion of AD by the β-CD. The work generated by the engine is harnessed to push the alkyl moiety from the hydrophobic cavity of the CD to water, to modify a dihedral angle by a twisting motion about the C–Cα bond, and to increase the tilt angle between the mean plane of the sugar unit, which connects the amide moiety, and the mean plane of the CD. By deciphering the intricate mechanism whereby the present molecular engine operates, our understanding of how similar nanomachines work is expected to be improved significantly, helping in turn the design of novel, more effective ones. J. Phys. Chem. C 2014.

Recent publications

Dehez, F.; Delemotte, L.; Kramar, P.; Miklavcic, D.; Tarek, M.
Evidence of conducting hydrophobic nanopores across membranes in response to an electric field
J. Phys. Chem. C

2014, 118 (13), 6752-6757.
dx.doi.org

Liu, Y.; Chipot, C.; Shao, X.; Cai, W.
Threading or tumbling? Insight into the self-inclusion mechanism of an altro-α-cyclodextrin derivative
J. Phys. Chem. C

2014, 118 (33), 19380-19386.
dx.doi.org

Liu, P.; Chipot, C.; Cai, W.; Shao, X.
Unveiling the underlying mechanism for compression and decompression strokes of a molecular engine
J. Phys. Chem. C

2014, 118 (23), 12562-12567.
dx.doi.org

News

- Two positions for postdoctoral candidates are opened. For more information.
- An update of ParseFEP is available in the latest version of VMD.
- 新的分子动力学讲义 (Dissemination).

Contact

Laboratoire International Associé
CNRS-UIUC
 
Unité mixte de recherche n°7565
 
Université de Lorraine, B.P. 70239
54506 Vandoeuvre-lès-Nancy Cedex, France

 

Phone: +33.(0)3.83.68.40.97
Fax: +33.(0)3.83.68.43.87
 
How to reach us